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It should be mentioned that it can be confusing to use SGD coordinates to describe the repeats, since the sequences within the repeats match to two sets of coordinates, and the coordinates of the flanking sequences are displaced by about two kb (the length of the Type 1 repeat).
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VNTRfinder compares well to an existing resource of repeats matched between bacterial species [ 1].
This number was reduced to 209,214 when repeats matching more than one region of the genome were excluded [see Additional file 2].
Fifty-five of the repeats matched (with an e-value of 10-10 or less) 46 passerine microsatellites isolated from 25 different species.
These families are not false positives sensu stricto as they should have been included in the set of repeats matching known TEs, but they do not represent new families.
Specifically, we introduce a special repeated matching protocol consisting of an initial phase terminated randomly and a terminal phase of T periods.
In this study, we took advantage of a system in which the major aerial predator was common, allowing repeated, matched observations of natural interactions between predator and prey, combined with a fully replicated playback experiment.
Her purple orchid-print Moschino dress (a repeat!) matched beautifully with her green pumps, which she's worn at at least one Floridian event before.
This is to avoid proteins that are identified with repeated matched MS/MS spectra (possibly in different charge states) of only 1 peptide sequence.
We separated each attribute into 20 percentile bins and repeated matched drawings 1,000 times.
We repeated matching across or within trials, with and without common support restrictions.
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