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This analysis was also repeated calculating Spearman correlations.
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Therefore, the MO-LLR output of any observation should be remembered for a few seconds to prevent repeating calculating the LLR score in (5). Figure 3 State transition diagram of the proposed algorithm.
It permutes the phenotype label and repeats calculating the enrichment score for the test.
The same assessment was repeated after calculating the actual distance in Km between resident and clinic location.
Mathematically defined repeats calculated on the basis of frequency of overlapping 20-mers (Kurtz et al. 2008) in the BES datasets enabled us to catalog our BAC clones as mid, low, and high repetitive.
The numbers of tandem repeats calculated from PCR fragment sizes obtained for each locus were confirmed by sequencing (Table 2).
Predicted number of each class of repeat was calculated as the ((expected frequency of a particular type of repeat, calculated as just stated)/ total of expected frequencies of all categories)) * observed total number of repeats.
Equicktandem rapidly identifies potential repeat sizes whereas etandem searches genuine tandem repeats, calculates a consensus for the repeat block and takes gaps into account.
The copy numbers of individual repeats calculated from the frequency of their occurrence in 454 reads were in a good agreement with estimates based on other experimental data (Fig. 1 and Additional file 1).
The A matrices are for repeated immigration calculated after three generations (t = 3) with ϕ = 0.20.
The same process was repeated to calculate the number of ADDDK/Y and number of DADDDK/Y.
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