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Here repeat ratios are represented as percentages.
Only small fractions of the genome, i.e., 3.3% have repeat ratios within 10%.
In total nearly 99.6% of the genomes have their repeat ratios ranging from 10%to70%0%.
Therefore to correct the observed abundances we either subtract or add the first standard deviation of the repeat ratios of 2031 genomes to the mean of the repeat ratios of 2031 genomes.
For the genomes with repeat ratios between 15% and 50%, the mean of the repeat ratio is considered as such.
The final mock-staggered community included genomes with genome sizes varying between 641,770 to 9,033,684 and with their repeat ratios ranging from 7 to 63.
Similar(47)
Almost about 69.2% of the genomes have a repeat ratio between 25%and60%0%.
Across 2,031 bacterial genomes the repeat ratio distribution ranged widely between 0.85% to 71.53%.
Therefore, we came up with a parameter "repeat ratio" to account for the abundances of repeated n-grams in each genome.
Repeat ratio is determined by computing the fraction of the repeated n-grams to the total number of n-grams in the genome.
From Figure S1 (Additional File 2), we noticed that most of the genomes have their repeat ratio ranging between 15% and 50%.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com