Sentence examples for repeat profile from inspiring English sources

We, however, on the basis of very thorough analyses based on mathematically derived repeats, self-alignment based de novo repeat detection, and homology to known O. sativa repeats, present a repeat profile for O. coarctata, which explains its low repetitive content as compared to other species.

6/6 culture-confirmed cases had identical VNTR (variable number tandem repeat) profile, so were directly attributable to the index case, given the very low incidence of active TB locally at 6.1/100,000/year [ 5].

RADAR builds a repeat profile to determine exact borders and extract a multiple alignment of repeats self-alignments, and TRUST explicitly makes use of consistency that has led to improvements in multiple sequence alignment.

The results of this analysis are shown in Figure 2. Panel A confirms that the two maize whole genome sequence sets have similar frequency distributions, providing an overall, unbiased repeat profile for the maize genome.

Together, these data indicate that the pathogenic isolates (the high-quality reference assembly of BFP-ToxAC, the Illumina-sequenced DW7-ToxB, and the ESTs from SO3-P) share a similar repeat profile that is different from that in the non-pathogenic isolate (the Illumina-sequenced SD20-NP).

ATCC and DSMZ authenticate cell lines by short tandem repeat profiling.

LNCaP cells (American Type Culture Collection, Cat# CRL-1740), androgen-sensitiveive prostate adenocarcinoma cell line, were authenticated by short tandem repeat profiling and tested negative for mycoplasma contamination.

Metastatic variant of MDA-MB-231 (ER−) and 293T were obtained from American Type Culture Collection, authenticated by short tandem repeat profiling and routinely checked for mycoplasma contamination.

HCC1806, MDA-MB-436, HCC1395, ZR-75-1, T47D, MCF7, BT474, and MCF10A were a kind gift from CRUK Manchester Institute and they were authenticated by short tandem repeat profiling by CRUK MI core facility unit.

Even with the paucity of sequences available, k-mer frequencies can capture a rich statistical information on the repeat profiles of many plant genomes (Kurtz et al. 2008).

There were dramatic differences in the repeat profiles of O. australiensis and O. brachyantha with respect to Class I and Class II TEs.