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The unit of repeat identified for a given interlock is represented as a set of structural beam like elements that defines the representative volume element (RVE), with periodicity boundary conditions.
Thus, the structure confirms that a PUR repeat identified on the sequence level indeed corresponds to a structural entity.
The program then compares each repeat identified by REPFIND with each intron in which it occurs.
Motif type indicates largest possible repeat identified for each staggered SSR set.
Thus, the final data set included exactly one box for each 8 nm repeat identified in the selected microtubules.
Most of the other validated binding sites are also not part of a repeat identified by RepeatMasker.
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A structure-based sequence alignment of the α-helical repeats identified a conserved pattern of hydrophobic or aliphatic residues reminiscent of the consensus sequence of eukaryotic HEAT repeats.
A peritrophic-matrix mucin, mucin 91C, has the largest number of Motif 2 repeats identified in this study.
spon1b encodes an extracellular matrix protein, whose C-terminal contains five repeats identified previously in Thrombospondin and other proteins implicating in cell adhesion.
Microsatellites can be chosen among reported repeats, identified by in silico sequence mining [14], [15], but also discovered through sequencing of STR enriched regions [16].
Simple sequence repeats identified within the predicted ORF.
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