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First, we are unable to repeat findings of spectral HRV indices seen in a smaller male sample [11].
Repeat findings in other cohorts would be helpful to validate these results.
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Mathematically defined repeats thus provide an alternative to traditional similarity-based repeat finding methods that rely on precompiled repeat libraries as well as to most self-alignment based approaches.
These results imply that our approach to repeat finding identifies regions that could have potentially been missed if either of the programs were solely used; an approach adapted by most large-scale sequencing projects.
Further bioinformatics analysis could include repeat finding and gene annotation.
This will facilitate the comparison of our results with results from other repeat finding software.
Sequences covered by cosmid 22E01 were subjected to repeat finding programs (for detail see Methods).
Seventy-five A. cerana-specific repeat elements were found using the de novo repeat finding program, RepeatModeler (version 1.0.7).
When used in conjunction with ab initio repeat finding tools, REPCLASS can assist in large-scale genome annotation.
This tool can be coupled with any repeat finding software, and it should greatly facilitate analysis of results.
Programs like ReAS operate in an inverse fashion, using only high copy reads to seed a sophisticated repeat finding strategy.
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