Sentence examples for repeat alignment from inspiring English sources

To further examine relationships among basal eudicot taxa, the slowly-evolving IR region of the Macadamia cp genome was aligned to a 159-taxa eudicot subset of the inverted repeat alignment of Moore et al. [ 5] in Geneious Pro with the outgroup taxon Ceratophyllum.

In particular, we focused our attention on the Xin repeat alignment.

These mutations occur at conserved positions in the LRR repeat alignment having a structural role in folding the LRR domain (Figure 3 and Figure 4).

We used Bayesian inference (MrBayes V3.0b4, [47] with the Xin repeat alignment using the JTT+Γ+I model to calculate posterior probabilities for nodes in the RAxML tree.

This idea was tested by applying Tajima's relative rate test for 3 sequences using MEGA4 [12] and the Xin repeat alignment (1,201 aa).

Three mutations are classified as structural variants (p.I298T, p.F318C, p.E383A), as they affect conserved positions in the repeat alignment and map into the space between the two β-sheets of repeats 2 and 3 (Figures 4 and 5).

Valuable information may come from an analysis of cumulative repeat alignments.

They will be referred to as "Established Repeat" alignments and are provided in Supporting Information S2.

For individual repeat alignments HHpred submissions were made without an additional PSI-BLAST step and in global alignment mode.

To investigate the effect of different query alignments, we first repeated the analysis using query repeat alignments that had been further optimised.

The alignments were filtered to remove repeat alignments leaving a 1-to-1 alignment between N. sicca 4320 and the other sequenced commensal.