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Segmentations and 3D renderings were performed using Amira visualisation software (v5.2.2, Visage Imaging Inc., Andover MA, USA).
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3D-renderings were performed using VGStudiomax software.
Surface renderings of the segmented vessels were performed using the same threshold but different colourmaps.
3D renderings were performed with Imaris (Bitplane, Zurich Switzerland).
3D renderings were performed with Imaris visualization software (Bitplane).
3D renderings were performed with Amira 5.2.2 (Visualization Sciences Group, Burlington, MA, USA).
3D renderings were performed to optimize orientation of gradient-echo T1.
The volume and surface renderings for the three-dimensional representations (Fig. 3) and the movie (S1) of the datasets were performed by VolumeGraphics based on the aforementioned segmentations.
The anatomical reference points, axes and planes on these renderings were marked using Rhinoceros™ 4.0 3D modelling software (Robert McNeel & Associates, Seattle, USA), which was also used to make the measurements detailed below.
Surface renderings were created using the Amira "Isosurface" module with a threshold chosen just above the noise floor.
Images were imported into Imaris software, and 3D renderings were created using the Surpass view.
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