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We removed low quality regions, vector contamination and potential polyA regions using Lucy2 [19], determining the longest continuous high quality region for each read.
To reduce the graph complexity, we filtered the "tips" which were shorter than 50 bp, removed low coverage dead ends in the graph, and then merged the bubbles which represent parallels.
We examined parental behaviour of bellbirds at three woodland sites in New Zealand that differed in predation risk: 1) a mainland site with exotic predators present (high predation risk), 2) a mainland site with exotic predators experimentally removed (low risk recently) and, 3) an off-shore island where exotic predators were never introduced (low risk always).
This procedure removed low molecular weight materials.
We further removed low complexity sequences using mDust [ 38].
We have not removed low complexity regions because SLiMs frequently occur within them.
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Both LMGS and spline detrending effectively removed low-frequency components, but unlike spline detrending (which is designed to remove only low frequency trends), the LMGS removed higher-frequency global fluctuations throughout the challenge and baseline series.
At the Theo Lacy complex, turf is being removed, low-flow toilets are getting installed, and inmates are getting new shower valves.
Briefly, we removed low-quality probes from the input data.
The quality control process removed low-quality sequences and vectors.
These reads were then subjected to filtering which removed low-quality sequence and primer contamination.
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