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We removed columns of possibly incorrect alignment using a method recommended by Sidow (personal communication).
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We applied the trimming criterion of Somerville et al. (1999) to remove columns of their average slip below 0.3 times the average slip of the entire fault (0.69 m in this study) from our slip model in order to estimate the proper rupture area of the earthquake.
We first removed all columns containing a gap character -, and then removed columns to the left and right of a gap column until reaching a column of chemical agreement.
The collapse index is used in parallel with another damage measure, the displacement ratio of the model that is defined as the ratio of the peak downward displacement of any removed column to the floor height.
An assessment of the plots shown in Figs. 14 and 15 indicate that progressive collapse is "sequence-dependent" and that there exists a critical sequence of column removals that results in the minimum number of removed columns before collapse is initiated.
(4) An assessment of the plots shown in Figs. 14 and 15 indicate that progressive collapse is "sequence-dependent" and that there exists a critical sequence of column removals that results in the minimum number of removed columns before collapse is initiated. .
To infer the final tree shown in Figure 1, we first used the GUIDANCE server [ 75] with 100 replicates of PRANK and removed columns with less than 5% support, in order to remove alignment columns that were likely to have been misaligned while retaining most of the potentially phylogenetically informative columns.
This threshold, while slightly higher than that used in our companion study, better reflects the somewhat lower amount of sequence diversity as a result of removing columns suspected of hypermutation.
The Displacement Sensitivity Index was generated to compare the gravity stiffness of the structures at the top node of the removed column before and after column removal.
This analysis produced putatively hypermutation negative sequence alignments by removing columns suspected of hypermutation.
Open image in new window Fig. 25 Effect of removed column location and beam section details on load displacement curve.
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