Sentence examples for removed aligned with from inspiring English sources

Reads that could be aligned to the human genome (H. sapiens, UCSC hg19) were removed (aligned with Bowtie2 (Langmead and Salzberg, 2012), using — reorder no-hd no-contain dovetail).

To improve the data quality of the aligned sequences, GBLOCKs was used to remove aligned columns with more than half gaps or with low data quality [ 35, 36].

The velvet assembly was cleaned of mitochondrial sequence by aligning the velvet contigs to the SN15 reference with Mauve 2 using default parameters and removing contigs that aligned with the mitochondrial sequence.

RNA-seq reads were all trimmed to 40 nt read length, adapters were removed, and reads were aligned with Tophat2 (Kim et al., 2013) against the mouse reference (GRCm38/mm10) genome.

By this step, 34 complexes are removed, as they cannot be aligned with any tertiary structure under the 95% sequence similarity condition.

The presence of a further system able to open the divertor port, used for RH aims, and remove the first cassette, already aligned with the radial direction of the port, is presumed.

Many support the fugitive former prime minister Thaksin Shinawatra and say they were robbed of their votes when he was ousted in a coup in 2006 and when later governments aligned with him were removed through court rulings.

Nonhomologous insertions and sequence characters that could not be aligned with confidence were removed manually.

The masked regions were removed and the resulting sequences were aligned with MUSCLE.

1EGJ is also removed because it can only be aligned with 1C8P, which is determined by NMR (not X-ray).

All pseudogenes, and one sequence that could not be aligned (NM_131143.1), were removed and the remaining sequences were aligned with ClustalW [ 38].