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Some preprocessing steps such as removal of inconsistent or incomplete tuples and discretization of numerical data are first done.
Removal of inconsistent annotations.
To verify reproducibility between spots across slides, F-tests were performed applying a 95% confidence threshold and allowing removal of inconsistent hybridization results.
The expression patterns of the DEGs were checked in the Prion Database (http://prion.systemsbiology.net) to compare with topology and associations' logic leading to removal of inconsistent 15 nodes and 81 edges.
An indication of this aspect came from the fact that the last filtering step (i.e., the removal of inconsistent SNPs present in any NIL sample) caused the exclusion of 5 additional SNPs only.
Similar(55)
After removal of self-inconsistent probes among the same gene, we could identify only 4 and 6 genes (3 genes are common) in the G9a-KD and the SUV-KD cells, respectively.
Removal of ambiguous or inconsistent phenotype annotations resulted in 38 confirmed lignocellulose degraders (phenotype-positive genomes), which degraded some or all components of lignocellulose (see Additional file 14: Table S1).
The magnitudes of the XTT signal are difficult to directly compare between the manual and automated methods due to inconsistent removal of media from the wells.
The complete elimination of bacteria inside the root canal is a difficult task, and inconsistent removal of the innermost layer of contaminated dentin leaves bacteria behind.
In cases where the reaction was set up without rigorous removal of air, conversions were inconsistent but generally much lower.
However, the increase in the levels of sna expression upon removal of the primary enhancer is inconsistent with this explanation.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com