The largest reduction (47% of reads removed) was due to the removal of duplicate read pairs, a result of the limited library complexity (Appendix B, Table B3).
However, we seen potential for earlier and greater cost savings driven by better purchasing power and removal of duplicate overhead costs.
removal of duplicate molecules from a dataset [60].
The last task in the pre-processing is the removal of duplicate compounds resulting from desalting and normalizing tautomers.
The performance of MAGMa+ decreases with increasing candidate numbers (in this contest 1116 on average after the removal of duplicate stereoisomers), however, in case of smaller numbers, it starts to outperform some of the other methods [25, 42].
Some published examples of these include the following: interconversion of chemical file formats or representations [44 47] addition of hydrogens [48 50] generation of 3D molecular structures [51 53] calculation of partial charges [54, 55] generation of molecular fingerprints [56 59] removal of duplicate molecules from a dataset [60] calculation of MOL2 atom types [61].
Removal of duplicate reads, allowing only one read per locus, yielded inconsistent results across the sample set (Figure S11).
After removal of duplicate genomic sequences for some bacterial strains, we calculated that the dPGM queries had 447 hits on 410 genomes (∼1.1 hits/genome) with a range of 0 to 3 hits per genome (Table S1).
The removal of duplicate reads is a well-defined procedure in experiments involving DNA sequencing but is less clear-cut when sequencing the transcriptome where varying transcript concentrations naturally lead to reads of identical mRNA segments.
Removal of duplicate diagnoses.
After removal of duplicate entries, 3956 unique papers remained.
