Sentence examples for remaining alignments from inspiring English sources

Phylogenetic trees were computed (with 100 bootstrap replicates) on the remaining alignments with the fast Maximum-Likelihood method implemented in PHYML [45].

The 594 remaining alignments were analysed using Multiphyl [ 23].

For the remaining alignments, the ILP finished in 11.24 h.

We use the sequences with e-value < 0.5 and discard the remaining alignments.

The remaining alignments (6,295 of 28,509) had identities varying from 90% to 99%.

We removed alignments with frame shifts and the remaining alignments were confirmed visually.

Of the remaining alignment, 207 sites were retained from the flanking exons.

An explaining remark is made in the log and the remaining alignment stages are skipped.

Finally, in this degapped alignment, proteins that included 70% or more of the remaining alignment were retained and counted as genes.

After the trimming process, if the remaining alignment was shorter than 120 bp (40 codons), then the entire alignment was discarded.

Alignment positions with 30% or more gaps were removed, and proteins encoding less than 70% of the remaining alignment were discarded.