Suggestions(5)
Exact(8)
Of the remaining alignment, 207 sites were retained from the flanking exons.
An explaining remark is made in the log and the remaining alignment stages are skipped.
Finally, we discarded all genes whose remaining alignment columns numbered fewer than 10% of their predicted numbers of codons, or were less than 100 codons in length.
In the remaining alignment, positional identity was impossible to establish in areas located N-terminal of the chromo domain (Fig. 2).
Finally, in this degapped alignment, proteins that included 70% or more of the remaining alignment were retained and counted as genes.
After the trimming process, if the remaining alignment was shorter than 120 bp (40 codons), then the entire alignment was discarded.
Similar(52)
Phylogenetic trees were computed (with 100 bootstrap replicates) on the remaining alignments with the fast Maximum-Likelihood method implemented in PHYML [45].
The 594 remaining alignments were analysed using Multiphyl [ 23].
For the remaining alignments, the ILP finished in 11.24 h.
We removed alignments with frame shifts and the remaining alignments were confirmed visually.
We use the sequences with e-value < 0.5 and discard the remaining alignments.
More suggestions(15)
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.
Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com