Perl scripts were used to annotate the porcine sequences with relevant information parsed from human UniGene and LocusLink (e.g., gene symbol, gene name, function, OMIM number, PubMed identification numbers) to obtain GO annotations associated with human and mouse UniGene numbers.
This process includes correcting misspellings and truncations that occur in data, extraction of relevant information via parsing, and correcting inconsistencies in the extracted information.
When one is created, the tool parses relevant information from a Simulink-like model.
Relevant spectra were parsed from the concatenated MGF format data file and subjected to de novo analysis using PepNovo+3.1 beta, a previously reported probabilistic network-based sequencing algorithm [30].
After parsing the relevant SBML elements or annotation, the parser populates the database not by direct inline SQL calls, but by employing a large number (about 200) of database wrapper class functions.
"As you know, it isn't always straightforward to, ah, parse the relevant figures from our competitors, so the comparison can't be exact, but we are confident that your department's performance is in the top quartile for the sector".
In this context, it is pertinent to mention the efforts by Rzepa and Peter Murray-Rust for developing tools to parse chemically relevant thesis and other published articles for harvesting analytical data [10, 11].
Legal experts from the National Conference of State Legislatures recently parsed the relevant statutes governing guns in schools.
One example of parsing non-relevant results was the use of SMX Echo by the PAN, a political party in Mexico, whose acronym means bread in Spanish.
In our context, some relevant parts of the parse tree or lexical subsequences can be used as the input to the convolution kernels.
