Also, we found a very large enrichment of peak occupancy (Table 10), relative to promoter occupancy (Table 9), in both cancer models.
To quantify the MNase-sensitivity of cenH3 nucleosomes, the nucleosomes flanking the cenH3 peaks and the +1 nucleosomes, we plotted the occupancy at these features relative to the occupancy of first time point.
Notably, the receptor location analysis work in these studies compared ERα target occupancy after chromatin immunoprecipitation using E2-treated cells relative to ERα occupancy of chromatin DNA prepared from cells not subjected to immunoprecipitation (i.e. sheared input).
Second, the nucleosome occupancy was scaled by dividing values by the average nucleosome occupancy of the whole genome, i.e., the nucleosome occupancy was expressed as the fold change of the absolute occupancy relative to the average occupancy.
Public transit systems with high occupancy can reduce greenhouse gas (GHG) emissions relative to low-occupancy transportation modes, but current transit systems have not been designed to reduce environmental impacts.
The final nucleosome occupation is represented as the fold of the occupancy relative to the average occupation.
If we further assume a non-saturating physiological concentration of TF relative to DNA, the occupancy N of a sequence Smut is directly proportional to this association constant K a and the concentration of the factor [TF].
The supplementary figure compares occupancies relative to the A site codon and, as a control, occupancies relative to the next codon past the A site.
Often the change in electron occupancy relative to equilibrium is imagined to be consistent with a double-step-like function6,7,9.
From 1 June to 31 August (2004 2005), we used Anabat II detectors to examine bat activity and species occupancy relative to forested corridors on an intensively managed forest landscape in southern South Carolina, USA.
