This draft network contained annotation-based information available for C. beijerinckii from the KEGG database, including GPR relationships, pathway information, reaction stoichiometry, and reaction reversibility.
Thus, additional functionality is built for the Repository to manage relationship, pathway, and subtype metadata.
We hypothesized that these genes can reveal the functional relationships between pathways and aid in the interpretation of the pathway network links.
The relationships between pathways and GOBP terms were represented as an undirected graph where edges between pathways and GOBP terms were evaluated based on Kappa statistics.
We investigated biological relationships, canonical pathways and Upstream Regulator analyses as part of the IPA software.
We found relationships between pathways and the pathological-based subtypes of the AD tumors (see Table 5).
Additional information such as relationships between pathways will be required to fully explain such cases.
Several of these genes have known relationships in, pathways which coordinate metabolism in mammary cells as well as tissue remodeling.
Several approaches have been used to explore the gene-to-gene relationships and pathways reported in the literature.
One way to get insight in possible relationships between pathways is to look at their overlap in gene, protein or metabolite content.
