Sentence examples for relationships manually from inspiring English sources

The LitMiner tool was used since it is a much faster than searching for gene relationships manually.

In conjunction with a well-accepted learning algorithm, L1-regularized logistic regression (Friedman et al., 2010), we base our method on a large collection of causal relationships manually curated from the literature.

All host gene-intragenic miRNA relationships were manually verified by using the UCSC Genome Browser (release 2006/March; http://genome.ucsc.edu/).ucsc.edu/

Species belonging to Ottelia [ 15], Halophila [ 78] and Vallisneria [ 80] with known phylogenetic relationships were manually added to the tree which resulted from the phylogenetic analysis.

We evaluated the quality of one-to-one orthology predictions using a data set of 107 C. elegans genes for which orthology relationships were manually investigated using alternative versions of P. pacificus gene predictions, TBLASTN searches to complement incomplete gene models, and subsequent phylogenetic analysis including all potential paralogous sequences.

To ensure the greatest possible accuracy of the directions assigned and the number of references that support each relationship, we manually curated all of the text-mined relationships by reading ~6,000 extracted text entries describing ~1,000 protein-autophagy and chemical-autophagy relationships.

During BAC anchoring, the contigs showing conflict in the marker-BAC relationship were manually split based on CB map and BES information.

-wrap> To predict functional relationship, we manually short listed the BLAST hit scores of the GO terms (classified at level 3) and compared common/unique salivary transcripts associated with diverse molecular and cellular functions of salivary glands under distinct physiological feeding status (Fig. 1B).

Relationships were examined manually in the Ingenuity Pathways Knowledge Base to determine if target genes were activated or repressed by p53.

These relationships were then manually filtered to remove paths arising from pan-isoform studies, where no isoform specific function was provided.

A consensus file of ancestor descendant relationships was created manually from the 6 result files by applying the following guidelines in sequential order (if a rule was not applicable, the next applicable rule was chosen): ▪ Majority rule: The relationship chosen by a majority (at least four) of the six methods was chosen as the consensus.