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Genes were functionally classified with Gene Ontology terms using the PANTHER 6.1 (Protein ANalysis THrough Evolutionary Relationships) Classification System [88].
We analysed the gene expression profiles using the PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System (http://www.pantherdb.org/tools/genexAnalysis.jsp).jsp
Categorization of genes according to protein class was done using PANTHER (Protein Analysis Through Evolutionary Relationships) Classification Systems [ 32].
Gene Ontology analysis of proteins was carried out by using the PANTHER (Protein Analysis Through Evolutionary Relationships) classification system [ 99] and Swiss-Prot KB gene ontology data [ 100].
Associations of the differentially expressed genes with biological processes, molecular functions, and pathways were annotated using the PANTHER (Protein ANalysis THrough Evolutionary Relationships) classification system [ 15, 16].
We then examined the biological processes that were significantly over-represented in the two sublists using the PANTHER (Protein ANalysis THrough Evolutionary Relationships) classification system [ 14].
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One exception in terms of these overlaps is the relationship classification coded on Axis II, which has a novelty character.
Classification features of individual nodes in complex network, role requirements in network organization, and relationship classification of elements of network organization are potential driving force [ 33].
The DC:0-3/DC:0-3R represents a multi-axial assessment scheme that is comprised of clinical disorders of the early childhood (Axis I) with a relationship classification on Axis II.
Concentration response relationship classification, potency, efficacy, and Hill coefficient were determined for all compounds and used to evaluate cytotoxicity of each compound in the 13 cell types tested.
The PANTHER (protein annotation through evolutionary relationship) classification system [ 32] was used to perform functional annotation and Gene Ontology (GO) analysis of genes that overlap with or are neighbors of the differentially expressed lncRNAs.
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