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Semantic relationships between compounds and substances, chemical descriptors associated with compounds and substances, interrelationships between chemicals, as well as provenance and attribute metadata of substances are described.
This integration enables researchers to easily extend their current HTS workflow in order to discover new hit series and reveal hidden relationships between compounds, scaffolds and clusters.
GVKBIO databases are populated with explicit relationships between compounds, assays and sequence identifiers that have been manually extracted from journals and patents on a large scale [3].
Since 2004 public cheminformatic databases and their collective functionality for exploring relationships between compounds, protein sequences, literature and assay data have advanced dramatically.
PCA allows the relationships between compounds (the observations) and their retention parameters (the variables) to be visualised in usually just two or three dimensions.
We are now deveoping a next generation of tools based on WENDI and our recent Chem2Bio2RDF system [39] for exploring inferred relationships between compounds and diseases, genes, pathways using Semantic Web technologies including ontologies and RDF.
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As a result the relationships between compound and combination properties may be investigated simultaneously, and thus may afford insight into the synergy observed in the screen.
In addition, chemical ontologies may enable new ways of knowledge discovery for example by extracting relationships between compound classes and related data from other domains, which are traditionally known as structure-activity relationships (SAR) or structure property relationships (SPR).
In addition, it may enable new ways of knowledge discovery for example by extracting relationships between compound structure and its properties, traditionally known as structure-activity relationships (SAR) or structure property relationships (SPR).
A category theoretic approach to lattice leads to the use of Galois connections to build the lattice: in this case, the lattice is named a Galois lattice [51] and supports ordered relationships between compound elements from two different sets, provided these sets are monotonous.
Beyond the chemical composition relationship, PubChem designates an identity grouping relationship between compounds, called a Compound Identity Group CIGG).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com