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We used data extracted from the relationship file and pathway file from PharmGKB.
The Gene Ontology full ontology relationship file was downloaded from the Gene Ontology website (OBO version 1.2; http://www.geneontology.org/GO.downloads.ontology.shtml).shtml
Besides drug, disease and gene, we also extracted haplotype and SNP information that exist in the PharmGKB relationship file.
The miRNA miRNA co-functional relationship file can be saved as a.txt file, which can be further utilized to visualize the co-functional network in Cytoscape like software.
In this study, we used PGx information extracted from a relationship file received from the PharmGKB by May 8 , 2013 which provides associations between two PGx concepts, including drug, gene, disease, SNP and haplotype.
Alternative ontologies can also be added in GO-Elite, by specifying the URL for any OBO ontology file and importing a species-specific ontology ID relationship file through the user interface.
Similar(52)
In order to generate decommissioning options for OOGPs efficiently, methodology is developed to combine the relationship files from the database automatically.
Using the corresponding sample-data relationship files as a guide, all experiments using root tissues were selected and the corresponding CEL files were retrieved.
The U.S. Census Bureau provides a set of census tract relationship files that link the 1990 and 2000 census tracts (U.S. Census Bureau 2003).
This issue of the relationship between file names and song names was also the heart of the debate today inside Judge Patel's courtroom.
In this paper, the relationship between file size and HDFS Write/Read (denoted as W/R for short) throughput, i.e., the average flow rate of a HDFS W/R operation, is studied to build HDFS performance models from a systematic view.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com