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This transforms the initial meaning of an edge into a new binary relation: the existence of an edge between two nodes represent a T(m i, m j ) ≥ t similarity relation between molecules m i and m j.
Numerous studies have analyzed the relation between molecules and functions.
This quest to find the true relation between molecules, linked into supramolecular complexes and assembled into an intricate network of cellular compartments, is revolutionizing modern transmission EM.
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However, the topology of a fully connected network provides little help in finding interesting relations between molecules based on network topology.
This is the most common situation in many biological and biomolecular studies where many of the true occurring relations between molecules are not yet known.
The plot view allows the user to visualize relations between molecule properties in 2- and 3-dimensional scatter plots.
If we consider the relation between gas molecules and a model for gas, namely a collection of billiard balls in random motion, we will find properties that are common to both domains (positive analogy) as well as properties that can only be ascribed to the model but not to the target domain (negative analogy).
In the schematic presented in Figure 5, receptors cross talk and Boolean dependence relations between intracellular molecules are shown.
There are known examples of such unrooted/unordered RNA structural conservations [ 18, 19], therefore, it is possible that searching for unordered and unrooted structural similarities may reveal new relations between RNA molecules that were previously undetected.
Through exploring the relations between drug molecules and mouse disease models, our method was able to assess whether the corresponding model recapitulates the essential features of the human disease.
Molecular similarity refers to the relation between pairs of molecules, whereas molecular diversity is based on pair-wise relations of a population of molecules (e.g. a compound collection).
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CEO of Professional Science Editing for Scientists @ prosciediting.com