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Tables relating GO terms with gene IDs can be found in the NCBI web page [ 14] and GO Consortium web page [ 15].
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Moreover, except for the abiotic stress related GO terms, biotic stress related GO term e.g. "defense response to bacterium (GO 0009816)" also exhibited significant enrichment among these commonly up-regulated genes (Fig. 2a).
Stress related GO terms in the GO enrichment analysis.
At 2.5 h and 3 h stage, the filtered DEGs were enriched both in DNA MMR related GO terms and DNA replication related GO terms (Fig. 4B and 4C), such as DNA replication (GO: 0006298), cellular response to DNA damage (GO: 0034984).
Also the filtered DEGs at 3.5 h stage were enriched in DNA replication related GO terms like DNA replication (GO: 0006298), DNA-dependent DNA replication (GO: 0006262) (Fig. 4D).
The filtered DEGs up regulated at 2, 2.5, 3, and 3.5 h stages were enriched mostly in metabolic process related GO terms (Fig. S2), such as carbohydrate derivative metabolic process (GO: 1901135), carboxylic acid metabolic process (GO: 0019752).
If g belongs to a single cell-cycle related GO class, we use this as our G.
Interestingly, recent findings of the in vivo binding partners of NRSF show synaptic transmission and other closely related GO terms among the most significant [40].
GO Finder finds related GO terms for each sentence.
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