Exact(11)
The next most closely related sequence to the globe artichoke acyltransferase is an Arabidopsis thaliana HCT (80% identity and 89% similarity) (Fig. 2).
The most closely related sequence to both isolates was strain 6119, isolated in May, soon after the beginning of the 1995 VEE epidemic in Falcon State.
The remaining more divergent homologue of PRLR/GHR, crfa4, also does not have a direct mammalian orthologue, and is most closely related sequence to the orphan T. nigroviridis receptor CRFA4.
> -wrap-foot> ┼Closely related sequence to VIROAF73 & VIROAF74 by blastn on GENBANK: Lineage 1a Reference Strains: Egypt 1951 (EU081844) and India 1968 (EU249803) and Lineage 2 Uganda 1937 (M12294 and AY532665).
A tBLASTx comparison of larger contigs (>15 kb) against WGS (Whole-Genome shotgun), HTGS (High-Throughput Genomic Shotgun), and GSS (Genomic Survey Sequences) from the NCBI was used to add the most closely related sequence to the analysis, which could have not been included in the NR and Refseq database yet.
GUARENTE: There's one gene in our genome, SIRT1, that would be a dead ringer for this one — the technical term is ortholog — but we also have six other genes that have a related sequence to this.
Similar(49)
Finally, to approximate the total genomic contribution of Atlantys related sequences to the Oryza genus, we assumed that the ratio of complete elements to solo LTRs was 1 3, as previously calculated for O. sativa var.
This shows that the most closely related sequences to the fungal adenylate/guanylate cyclase catalytic domains are from the excavates Leishmania major and Trypanosoma cruzi.
Progressive alignment works by using the guide tree to align the next most closely related sequences to each other.
A nearest neighbor algorithm was used to collapse the data into unique sequences by merging closely related sequences, to remove both PCR and sequencing errors.
This approach identified the most closely related sequences to our dinoflagellate clade while allowing for HGT and paralogous sequences in other lineages.
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