Suggestions(1)
Exact(8)
MAK was also used to obtain the related empty sites (RES) for each ATon family with 50 bp flanking sequences on both ends.
To identify the junction between the elements in TF000742 and TF000743 families and their flanking sequences, if present, the related empty sequences (RESs) of the flanking sequences were retrieved and aligned.
By using the flanking sequence of Ozma as a query sequence to search against the genome database, a related empty flanking site containing a single copy of the "TA" target site was identified in the contig AAGE02019547.
In addition, comparisons between the sequences flanking these elements and the related empty sites in SC5314 (not shown), revealed that both elements had inserted into short poly-A tracts, as have the elements in SC5314 [ref. [ 42], and data not shown], suggesting that Zorro3 elements might preferentially integrate at such sequences.
TE, Transposable element; RES, Related empty site; TIR, Terminal inverted repeat; ITR, Inverted terminal repeat; TSD, Target site duplication; LTR, Long terminal repeat; SINE, Short interspersed transposable element; LINE, Long interspersed transposable element; MITE, Miniature inverted repeat transposable element; AFLP, Amplified fragment length polymorphism.
Furthermore, analysis of related empty sites suggested that these elements had all inserted into short poly-A tracts.
Similar(52)
In order to find RESites (Related to Empty Sites) in the M. truncatula genome we performed a computer-based search, essentially as described by Le et al. [ 8].
In order to find evidence for a possible mobility of identified elements we implemented a strategy proposed by Le et al. [ 8], i.e. we searched for regions, called RESites (Related to Empty Sites), paralogous to sequences flanking the insertion sites, but lacking the transposable element.
There was no change in gastric emptying of either solid (P = 0.35) or liquid (P = 0.37), and the rate of solid emptying at baseline was related to emptying at follow-up (r = 0.56, P < 0.05), with a trend for the liquid component (r = 0.49, P = 0.11), which became significant (r = 0.82, P = 0.002) on excluding one subject with abnormally rapid emptying at follow-up (Fig. 1).
Gastric emptying of solid at follow-up was related to emptying at baseline (r = 0.56, P < 0.05).
Colson relates how empty this 1972 "Victory Party" felt compared to the more emotionally fulfilling 1968 "Victory Party" wherein everyone had felt more, uh, Victorious.
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