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The regulation ratios varied from 0.12-14.4 0.12-14.4
Differential regulation ratios for infected samples were averaged per protein across all time points or patients.
The set of Family Regulation Ratios for a particular Pfam family across multiple experiments is called a Family Regulation Profile.
The set of Family Regulation Ratios for each protein family across multiple experiments is called a Family Regulation Profile.
The proteins obtained were organized by the PLGS ExpressionE tool algorithm into a statistically significant list corresponding to increased and decreased regulation ratios among the different groups.
Compared to controls (pneumococci in cell culture medium), the gene regulation ratios for pneumococci in contact with virus- or mock-infected pharyngeal cells varied from 0.1 to 14.4.
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For example, one can ask about the "hihara ratio" or the "hihara regulation ratio", which are taken to be synonymous.
Experiments were performed by Hihara on the organism synechocystis_pcc6803 s68033), and a high regulation ratio was discovered in those experiments on gene S6803.ssr2595, which is an ortholog of PMM0817.
Examples include "Does pmm0226 not have an ortholog in mit9313?" "What is the Hihara mean regulation ratio of pmm0226?" Moreover, various semantically equivalent forms are acceptable.
Two somewhat more problem-specific primitives are needed in order to work with microarray data, and to examine gene annotations: (regulation-ratio ?gene3 ?experiment)—This function returns a number representing the mean up-or-down regulation ratio of a given gene in a given microarray experiment.
In the present example the data from the experiment of Hihara et al. [11] is available and has been massaged as described in Appendix S1 to provide a mean regulation ratio for each gene.
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