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The long reads produced by the new PacBio RS II system, combined with sequence depth meant that the principal regions of complexity could be resolved using one library preparation and two SMRT cells to generate a complete genome sequence.
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However, given that the majority of Mediator complex components are rife with regions of low complexity sequence at this point other obvious RNA-binding domains remain difficult to detect.
Because approximately 14% of both CMCP6 and YJ016 are low complexity, these unmapped reads also may be derived from regions of low complexity in the sequenced genomes.
More autonomous control is thus achieved in operating regions of greater complexity and uncertainty.
After this, SEG and NCoils were run to remove regions of low complexity and coiled coils from the input sequence.
Several B. pseudomallei TAAs contain multiple head regions, regions of low complexity, and are up to 2800 amino acids long [1].
The starting point for the study of Pizzi and Frontali was the observation that many malarial proteins are longer than their homologues in other species and that these insertions corresponded to regions of low complexity [23].
Matches to repeats or regions of low complexity were eliminated.
Simple repeats and regions of low complexity were excluded.
The '-dust' option identifies and masks regions of low complexity regions in addition to interspersed repeats.
Abbreviations: LC, regions of low complexity; TM, transmembrane regions; CC, coiled coils; SP, signal peptides.
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