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Here we present the results of several series of simulations specifically designed to evaluate the effects of common computational parameters of non-equilibrium MD (NEMD), such as the type of boundary conditions, size and location of heat bath regions, definition of the CNT length, and the choice of interatomic potential, on the computational predictions.
This design is similar to the PSR (probe selection regions) definition for Affymetrix exon arrays [ 18], and can reflect the complexity of the exon structures where alternatively spliced exons from the same gene may overlap (i.e. alternative donor or acceptor sites).
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If the region definition on the Sherpa command line contains an arcsec or arcmin symbol, it must be escaped: \" or \'.
If the region definition is saved in the REGION or SRCLIST extension of the FITS file, ds9 will automatically find the correct extension.
If the region definition on the Sherpa command line contains an arcsec or arcmin symbol, it may need to be escaped: \" or \'.
The performance and robustness of controllers designed using the two methods and the effects of approximations in the uncertainty region definition are then described and compared.
If a source region extends off the field of view, it may be necessary to include the FOV edge in the region definition, e.g. to restrict a background region to the FOV.
High statistical significance of the 3D QSAR models has been achieved through the application of several data noise reduction techniques (i.e. smart region definition SRD, fractional factor design FFD, uninformative/iterative variable elimination UVE/IVE) on the original MIFs.
(The # and the identifying letter are not part of the region definition). So, A overlaps B. B overlaps A and C. C overlaps B. D will fall into the background of C. In the examples below, Al, Bl, Cl and Dl represent the background regions around A, B, C, and D respectively.
(DOCX 24 KB) 12284_2014_22_MOESM4_ESM.docx Additional file 4: Table S3.: Genome region definition by the presence (O) or absence (X) of SNPs.
These slightly discrepant findings may be due to a different scoring protocol and region definition in their study and to a different method of cluster determination.
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