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Given a pair of aligned genomes i and j, the number of SNPs xij observed between i and j within a region of length l follows a binomial distribution B l, pij), where pij is the expected proportion of recombination-free nucleotide differences between taxa i and j.
For wavelengths below 1 μm [13], the exchange interaction becomes important so that this contribution has to be taken into account for mixed dipole and exchange spin waves in an intermediate region of length scales.
Thus, the expected number of matches in a single promoter region of length L equals ρ (L-LHRE+1), where LHRE is the length of the HRE consensus.
A region of length 500 bp, centered around the center of the enhancer, was taken from each enhancer region.
The average number of variants per region was 2.42, with a maximum of 12 (a region of length 6 bp).
We defined a contig by a seed region of length L, covered by at least C reads.
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Specifically, for a given sub-region of length l, the algorithm computes the average Ks value.
UTR regions of length less than 100 bp are discarded.
Large K27HMD regions of length >4 kbp suppress the expression of many developmental genes [ 8].
Conserved regions of length 8 bases or more are only considered.
Setting the minimum length threshold to 4 kbp in CSMinfinder detected more regions of length > 6 kbp but fewer regions of length >7 kbp compared with Nakamura's method.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com