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A search of the 1058 zebrafish ESTs against > 400,000 zebrafish ESTs that were sampled from non-regenerating tissues revealed 43 that were unique to the zebrafish regeneration database (Table 7).
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We then asked whether any of these potential regeneration homologues were represented uniquely in limb and fin regeneration databases (and not in databases derived from other zebrafish tissues).
We are currently curating an additional database containing regeneration experiments of vertebrate and insect limbs.
The field needs specialized databases on regeneration, linking experiments to resultant morphologies, which can then be mined to extract relevant models of pattern formation.
Lobo D, Feldman EB, Shah M, Malone TJ, Levin M. Limbform: a functional ontology-based database of limb regeneration experiments.
This dataset also represents the first regeneration-based, large-scale sequence database for annelids as a whole and thus provides a valuable resource for regeneration research more broadly.
Outcomes of planarian regeneration experiments were entered into the database by hand.
With a current focus on immunology, infection, inflammation, tissue regeneration and cancer we developed a database platform that can load preprocessed Affymetrix GeneChip expression data for immediate access.
The present study has added new information in order to increase the database on the hyaline cartilage regeneration induced by the PAMPS/PDMAAm DN gel.
This information will contribute to an increase of basic database to create an effective protocol for regeneration of cartilage in the near future.
We have already established an EST database obtained from cDNA libraries of normal and regenerating intestine at two different regeneration stages.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com