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Finally, in the refinement phase, the alignment is refined by iteratively removing aligned nodes and adding new mapped ones.
If two alignments have many nodes in common, the one with the least number of nodes is discarded from the final set; "Refine": the number of iterations of GASOLINE in the refinement phase; "Min Complex Size": the minimum size of conserved complexes in the final set of local alignments.
Some ' putative GIs' are identified in the first phase, and those are refined into smaller segments containing horizontally acquired genes in the refinement phase.
In the second 'finishing' (or refinement) phase, the resulting draft sequence assemblies are analyzed and refined, often with additional sequence data generated to improve continuity and accuracy.
This is only possible after the next refinement phase.
During the refinement phase, the aligners were five for both upper and lower arches.
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If the transformation is used in critical software development for example, this operation could be omitted or removed in the refinement phases.
With only two weeks to go between the midterm and the final presentation, the teams hunkered down and went through Redesign / Partly Redesign, Detailing and Refinement phases, making three presentations to their peers as part of the process.
Initial SeMet positions were determined by SHELXD (Schneider and Sheldrick, 2002) through the HKL2MAP (Pape and Schneider, 2004) interface and fed into Crank2 (Skubak and Pannu, 2013) for substructure refinement, phasing with Refmac (Murshudov et al., 1997), hand determination, initial density modification with Parrot (Zhang et al., 1997) and model building using Buccaneer (Cowtan, 2006).
Apart from the grain refinement process, phase transformation took place at late stages of deformation, resulting in the microstructural fingerprint of equaxied nanograins with multiple phases in the steel.
Furthermore, the microstructural refinement and phase rearrangement upon severe forging have been explored using X-ray diffraction and transmission electron microscopy to reveal the dislocation activity inside the lamellae interior and at the β-Ti/FeTi interface.
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