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We now refer to the works by professor Collado-Vides [ 2], which contain references to databases on promoters and regulation factors including the RegulonDB database.
Literature and Internet searches provided circular and often misleading references to databases or textbooks, which either simply state the dose without reference or refer to another textbook and so on.
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CycTools will directly reject syntax errors such as bad file formats of invalid references to database objects.
In other cases, authors merely use compound names without referencing to databases.
By reference to databases of known metabolite NMR spectra, we identified the components present in each spectrum accounting for the vast majority (>90%) of the observed signals.
Facility is provided to create, connect, and annotate nodes and processes on a drawing panel with reference to database objects and time course data.
Additionally, references to external databases are offered to elaborate the data in the database.
BIND records often contained references to additional databases, such as ChEBI for small molecules.
Compartments, metabolites, genes, and reactions may include several references to external databases using the MIRIAM notation.
Research on existing models is facilitated by a search system, references to external databases, and a feature-rich comparison mechanism.
We also developed an intelligent method to choose references which maximizes the chance of references to prune database networks.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com