These data provide a reference set against which future changes in vertebrate fauna can be assessed and hence will be baseline data for the longitudinal study.
The actual word strings in the corpus are taken to be our Reference set, against which we intend to compare (therefore intrinsically) the output produced by 10 alternative generation strategies: the four FLMs (2WL, 3WL, 2WLP and 3WLP) discussed in the previous section, and six baseline systems as follows.
Large reference databases such as the Earth Microbiome Project associate marker gene distributions with a wide range of habitat and temporal information; these resources will provide a rich reference set against which new data sets can be compared.
We conjectured that similar results might be returned if compounds were scanned not against the full reference set, but instead against a reduced set generated by clustering all compounds in the full set based on RDKit fingerprint similarity, and keeping only one representative compound from each cluster (see Materials and Methods).
To study their alignment behavior, these (5,412,049) peptides were aligned against "Reference set" proteins (used BLASTP with default parameters).
A set of extended exons obtained through the spliced alignment of human reference sequences for the test set against the reference chromosomal assemblies, as described previously, was used as a sample representative collection of important human genomic regions with potential implication in medical practice.
Regarding quality, the SDRs resulting from any of the SSD runs were checked against our reference set of true signals.
A key feature of our method is that the parameters that define the diffracted spot are iteratively refined against the reference set.
Finally we aligned representative member of each cluster against the "Reference set" (using BLASTP), to discard those that were homologous to "Reference set" proteins and therefore may share similar fold and function.
We blasted the two transcript groups against our reference set and could assign 931 of 1,358 XY-enhanced transcripts and 157 of 187 XX-enhanced transcripts to our reference.
