Pineapples are monocotyledonous and phylogenetically related to Poaceae (including maize, wheat, rice, and sorghum), its genome is considered as a reference for comparative analysis of monocotyledons based on its well-conserved karyotype.
braziliensis M2904 genome was obtained from the Tritryp database (http://tritrypdb.org/) to serve as a reference for comparative analysis.
To assess the accuracy of the subsidence derived by using the PSI approach, the subsidence of the road network as measured by leveling is used as reference datum for comparative analysis.
The integrated map will be useful in facilitating whole genome assembly, molecular breeding, and positional gene cloning in cucumber, and could act as a reference map for comparative analysis in other cucurbit genomes.
GAPDH was selected as a reference mRNA for comparative analysis based on its behavior in the microarray data set, showing no signal value differences in different strains.
The gene dataset and individual contig groups were each used as reference sequence for comparative analysis of RNA-Seq datasets (SRR314814 and SRR314815 in Table 1).
The sorghum genome, the closest related fully sequenced and annotated genome to sugarcane, is widely recognized as reference genome for comparative analysis.
For plant species with unsequenced genomes, cDNA contigs created by de novo assembly of RNA-Seq reads are used as reference sequences for comparative analysis of RNA-Seq datasets and the detection of differentially expressed genes (DEGs).
CONTIGuator [ 9] was used to map resulting contigs to the reference genome 0140J for comparative analysis of genomic regions.
We used the previously published data for the reference strain [ 18] for comparative analysis.
The nucleotide sequences of the HBV genomes analysed from mothers and infants were most closely related to the HBV genome of genotype D, which was therefore used as the reference genome [ 11] for comparative analysis.
