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Firms that can extract meaning from this digital pile will have a big advantage.Mr Lynch, who developed Autonomy's technological underpinnings while writing a doctoral thesis at Cambridge University, wants his firm to become the "Oracle of unstructured data", a reference to the database giant that is the world's second-largest software firm.
For example, the presence of the web address, or uniform resource locator (URL) of a database in biomedical papers provides some evidence of reuse; however, if the URL is not present in the abstract, then the reference to the database will not be discoverable via PubMed or other bibliographic databases which only index abstracts.
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We have selected 2071 TMPs with more than two membrane regions and without structural evidence (cross reference to the PDB database) from the HTP database.
Of these, 34,705 unique sequences were annotated with reference to the nr database, while 5,475 unigenes were annotated using the other databases.
Constituent mineral phases were identified with reference to the ICDD database using DIFFRAC plus EVA.
Of these, 30,264 unique sequences were annotated by reference to the NR database.
By reference to the UniGene database [ 34], non-redundant clusters of ESTs were identified.
Among them, 47,993 unique sequences could be annotated with reference to the nr database.
These protein clusters were further analysed with reference to the Pfam database [ 44].
Molecular identification was carried out with reference to the GenBank database by using a highly polymorphic DNA target (10 ).
The deduced sequences were analysed with reference to the sequence databases (http://www.ncbi.nlm.nih.gov/assembly/GCF_000001635.20/ and http://hgdownload.cse.ucsc.edu/goldenPath/mm10/chromosomes/), and only the reads from mitochondrial genome were selected.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com