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First, the hydrology model was used to obtain peak runoff and TSS loads of bioretention with variable scales under different scenarios, i.e., different Representative Concentration Pathways (RCPs) and Shared Socio-economic reference Pathways (SSPs) for 2-year and 10-year design storms in Singapore.
The reference pathways listed in MetaCyc v13.5 included 1600 species and PlantCyc v3.0 available from Plant Metabolic Network (PMN) project (Zhang, Dreher et al. 2010a) included approximately 300 species of pathway data as reference.
The Pathway tools software contains algorithms that predict metabolic pathways of an organism from its genome by comparison to a reference pathways database known as MetaCyc [88].
The current version covers 91,879 pathways generated from 240 reference pathways and around 850 taxonomic species with 10,303 reactant pairs and 15,217 metabolites.
Currently, KEGG contains 198,560 pathways generated from 428 reference pathways.
Again, the clusters of pathogen-linked orthogs forming on KEGG reference pathways were identified.
At present, the KEGG contains 134,511 distinct pathways generated from 391 original reference pathways [ 37].
KEGG pathway maps are manually drawn reference pathways collected from published literature.
At present, KEGG contains 134,511 distinct pathways generated from 391 original reference pathways [ 26].
The users can select one of the reference pathways according to their purpose [ 18].
Additionally, we mapped enzymes onto reference pathways of the KEGG database [ 41].
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