Sentence examples for reference nucleotide from inspiring English sources

Almost all genomes contain the Nipponbare reference nucleotide for OsEULS2, only in 11% of the tropical japonica genomes the alternative allele is present.

Besides the fast and large-scale detection of RNA editing sites, NGS technology has provided depth of coverage (DOC) per reference nucleotide and qualities of base call.

Comparison with reference (nucleotide or amino acid general databases) or more specific collections, such as those from genomes, gene families, transcriptomes, or repeats, is fundamental to transfer information from already annotated molecules to newly defined ones.

Furthermore, the human reference nucleotide sequences were always at least nine nucleotides different compared to the other sequenced species both at the partial 12S rRNA and the partial 16S rRNA sequences.

For a given genomic coordinate, the "allelic ratio" is the number of reads aligned across that position that indicate the reference nucleotide divided by the number of reads that indicate the first non-reference nucleotide in dbSNP [35].

In order to estimate substitution trend more precisely, we selected the most abundant nucleotide at each position as reference nucleotide.

In many of these cases a non-reference nucleotide was observed in only one of the two samples (normal or tumor) and that nucleotide was not present in dbSNP.

We found that the minimum read percentage with non-reference nucleotide needed to predict a mutation was 3 12 times the average non-reference nucleotide frequency.

The number of unique mutants was counted by a custom Python script when the maximum read percentage with non-reference nucleotide was 5%, and minimum read percentage with non-reference nucleotide ranged from 0.135% to 0.37%.

Thus the multi-copy genes have a lower read percentage with non-reference nucleotide than single copy genes.

So, changing the minimum read percentage with non-reference nucleotide could be critical to control false positive predictions.