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It is then assumed that in similar studies without a reference linkage similar PPVs would apply.
Using such markers, saturated reference linkage maps for many plant species have been developed.
Taken together, the above results confirm the use of the N linkage as the reference linkage for this study.
Individual component maps were aligned to the reference linkage map of the TN-DH population to construct a consensus map.
These included 38 codominant and 17 dominant SSRs, which were successfully placed in the carrot reference linkage maps.
A robust reference linkage map containing sequence-based molecular markers is needed to capitalise on this resource.
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Superiority of the new network becomes more obvious when we mask the reference linkages derived from the term "protein synthesis".
This bias leads to biased learning unless appropriately taken into account, as the effect of reference linkages from the dominant GO term "protein biosynthesis" is quite strong (Figures 1 and 5).
The benefits of the divide-test-integrate method are illustrated in the improved precision for any given coverage of genes or reference linkages, as shown in Figure 3C on the independent MIPS protein functional linkage reference set (excluding the term "protein synthesis").
The integrated model, along with the various sets of linkages derived from individual data sets, was assessed on an independent test set of gene functional linkages derived from the MIPS protein function annotation set, calculating recall and precision of the MIPS reference linkages (Figure 4).
Electronic searches were supplemented by manual searches and reference linkages.
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