Sentence examples for reference for counting from inspiring English sources

The annotations present in the Mus musculus gtf file from the ENSEMBL release 67 were used as reference for counting.

For cross-species gene expression comparisons, the G186A gene set was used as the reference gene models for counting reads.

(14) as a reference for carbohydrate counting.

Two mismatches were allowed during the alignment step and only the reads that hit the reference uniquely were considered for counting towards locus-specific expression.

For Capture Validation (CapVal), we used the following algorithm to determine the validation status: First we obtained the mutant and reference allele counts for each marker in the corresponding sample, requiring a minimum base quality of 15 for SNVs and 5 for indels.

Nucleotide diversity was estimated for each TE reference contig by counting the number of variable sites, with read-depth higher than 6 and base qualities higher than 20 (column 6 from samtools pileup –vcf output), and dividing by the length of the contig.

The log2 ratio between a tumor and a reference was defined by the difference between the median log value of tumor counts and the median log value of reference counts for a given segment.

In pass 4, e2fsck checks the reference counts for all inodes, by iterating over all the inodes and comparing the link counts (which were cached in pass 1) against internal counters computed during passes 2 and 3. Any undeleted files with a zero link count is also linked to the /lost+found directory during this pass.

- Minimum read count for SNP call: Minimum number of non-reference allele counts required for a SNP to be considered detected.

People judged by proxy–'Who's your VC?' Great European references counted for nothing.

In the case of BindingDB and DrugBank we used the UniProtKB/Swiss-Prot database cross-reference for the protein counts rather than figures from the websites as this enabled the additional restriction to human proteins.