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One of these accessions is the reference accession Nipponbare where the inability to detect transposition of Ping or mPing was initially attributed to Ping silencing28.
A core collection of 24 accessions that maximizes the genetic diversity within the species and Col-0 (the reference accession) were grown vertically on agar medium at moderate (N+) nitrate level for 6 days and then transferred to the same condition or to low (N−) nitrate concentration for 7 days.
Finally, Col-0, the reference accession, displayed a standard average response to both watered and water deficit conditions.
The SOLD1 primers were designed from the LOC100125878 hypothetical bovine protein sequence (GenBank reference accession number NM_001105478).
All of the A. thaliana accessions profiled in this study had at least one element that was significantly different (p<0.01) from the Col-0 reference accession.
Since Col-0 is the reference accession and a parent of many of the available RIL populations, we have also included a table of elemental differences compared with Col-0 (Table 2).
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We analysed 13 Swedish and Finnish trees and 8 reference accessions including M. prunifolia 'Pendula' and three international cultivars belonging to its progeny.
Genotyping-by-sequencing (GBS) surveyed variation among 1064 individuals, including 985 newly collected wild samples, 56 accessions of C. arietinum that encompass the genetic and geographic breadth of the cultigen16 and 23 wild reference accessions.
List of the reference accessions included in the analyses.
The two reference accessions are near isogenic lines commercially important in Brazil.
The Reference Accessions for each predicted CAZyme in a given genome were obtained from the CAZY database (http://www.cazy.org).org
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