We now explicitly refer to the annotation of these heterochromatin-embedded genes (in the subsection headed "RNA-seq Methods").
refers to the annotations in Figure 1.
To investigate the preference of functional domains in bacterial toxins, this study referred to the annotations in InterPro [ 21].
refers to the annotations in Figure 1; p values were calculated with the Mann–Whitney U test.
The information of metabolic pathways associated with human, mouse and rat was referred to the annotations in KEGG (42).
Additionally, to unify the kinase names among a variety of phosphorylation-associated resources that contain various names for a kinase, the information of human (20) and mouse (40) kinases was referred to the annotations in KinBase.
In practice, the preprocessing such as image denoising before applying image hashing could further improve the robustness to additive noise (referring to the annotation below Table 2), since both FJLT hashing and NMF hashing are strongly robust to blurring.
For the prediction of glycosyltransferases we referred to the annotation available in the CAZy database [ 32].
For the prediction of glycosyltransferases, glycoside hydrolases, polysaccharide lyases and carbohydrate esterases, we referred to the annotation available in the CAZy database [ 48].
Complete or partial coding sequences of each Mhc class I gene was first predicted by GENSCAN, referred to the annotation, and finally confirmed by the sequencing of RT-PCR products.
