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Begin formatting.
Standard GATK variant caller output has the following fields: Chromosome, Position, dbSNP ID, Ref, Alt, Qual, Filter, Info Format, and Format Values.
For example, as shown in Figure 2, the querying way was chosen as 'by variant', corresponding input format and an example 'The format of input:chr pos ref var.
If you want to avoid this scenario, you can just use the basic in-line (in-text) citation format repeatedly, instead of using the ref name tag.
Ref L39.
The ref allowed it.
(anag.; ref. lads' mag).
The ref sees sense.
moneyobserver.com (quoting ref: MTGK001).
(anag.; ref. cricket).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com