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Redundant sequences were removed, forming a specific repeat database for each species.
First, redundant sequences were removed from the dataset.
Before analysis, we pruned the sequences to remove fragments and redundant sequences [4].
The percentage of miRNAs was 65.12% when the redundant sequences were counted.
Redundant sequences were identified by all-vs-all BLAST and discarded.
After removing the redundant sequences, there remained 743 unique mature miRNA sequences.
Similar(6)
For DUF54 (UPF0201), SYSTERS identified three subfamilies, including N149845 (10 non-redundant sequences, MW∼13 kDa), N149846 (16 non-redundant sequences, MW∼17 kDa) and N130963 (12 non-redundant sequences, MW∼15 kDa).
This successfully annotated 71.3% of the non-redundant sequences.
We identified 238,446 domains from these non-redundant sequences.
N50 = median length of all non-redundant sequences.
Two different approaches were used to cluster non-redundant sequences.
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