Sentence examples for reducing alignments from inspiring English sources

Here, we used a simple algorithm we have named REAP (REducing Alignments prior to Phylogenetic reconstruction) [ 30], which is designed to mask (i) columns containing many gaps and/or highly diverse amino acids and (ii) sequences that either have little overlap with other sequences or appear to be systematically misaligned.

This method clusters similar subsequences from a database to perform an efficient seed search and ungapped extension by reducing alignment candidates based on triangle inequality.

We also ran INTREPID on these reduced alignments as well as the full alignments for these 71 families.

We systematically removed the fastest evolving sites one at a time, and rebuilt ML phylogenies based on these reduced alignments.

Reduced alignments containing sets of representative sequences of less than 90% identity were obtained by using the CD-HIT suite [ 66].

TopHat2 reduces alignment to pseudogenes by aligning reads preferentially to genes within provided annotation.

To reduce alignment errors, we also align the reverse query sequence to the reverse reference sequence, namely reverse reverse alignment, in addition to the forward forward alignment.

The analysis includes spacers used to reduce alignment errors.

Reduced alignment and increased entanglement are the reasons of this decrease.

We found that knockout of syndecan-1 reduced alignment of vascular smooth muscle cells to the nanogrooves under inflammatory treatments.

Planar integration of various optical systems has been developed in recent years as a way to reduce alignment problems and to build small size, robust monolithic devices.