We have obtained the correct Sierra Leone data set from AFDIL, reconstructed the database using the new file, and reanalyzed all of the data.
We have decided not to model a relationship between instances and their consensus sequences because these can be reconstructed through database queries that use a wider set of data.
The demographic information provided by the parents, together with the information within the 2003 consent forms, allowed us to reconstruct a database of 573 children, now drawn from 20 secondary schools located in Torino.
The protein annotation data was queried in the NCBI_nr database reconstructed for mouse (Jan . 10 , 2007using Bioworks (Ver. 3.3).
Searches by keyword, identifiers, and molecular mass were established by searching through a server-side database reconstructed from KEGG flatfile distributions.
The metabolic networks of E. coli, P. aeruginosa, and S. typhimurium were reconstructed using the database of KEGG [ 48].
SS participated in the design of the study, developed the database, reconstructed metabolic pathways of mammalian genomes, conducted manual curation and comparative analyses, and wrote the manuscript.
The results of this study show that the data overlap of networks reconstructed with different databases, especially at the reaction level, was surprisingly low and therefore, the level of database agreement is deemed to be low as well.
We reconstructed the HECS databases for several different thresholds and then used the receiver operating characteristic (ROC) curve to determine if changing the threshold affected CTen's performance in terms of the true positive rate versus the false positive rate.
The metabolic network was reconstructed using the genomic database [ 13], biochemical texts [ 15- 17], metabolic pathway databases [ 18, 19], and archival journal articles (See methods section for specific articles).
