Exact(1)
After orthologous assignments were confirmed for pairs of human genes, the reciprocal assignments were analyzed from cow to human, using a similar process.
Similar(59)
Reciprocal assignment of genes to two COG terms infers functional closeness of such terms, expressed by an interaction.
This setting comprises both (i) the largest possible square image area selection and (ii) the automatic reciprocal lattice assignment mode.
The corresponding results of the automatic reciprocal lattice assignment setting of this program are also listed in Table 4 and carry ☺ signs to indicate artifacts of combinations of motif-based and translational pseudo-symmetries of the first kind.
The inspection of the amplitude maps of the dFTs of images #1 to #3 and of the corresponding maps of the other four images (#6 to #9) for which entries in red ink exist for the CrysTBox program in Tables 3 and 5 revealed that the reciprocal lattice assignment was not based on the two shortest reciprocal lattice vectors in the amplitude maps.
The results for this image are, therefore, analogous to that of image #8 as we also utilized the alternative (non-default) manual reciprocal lattice assignment feature of the CRISP program in order to compile the entries for image #9 in Tables 4 and 6.
The consequences of the two different modes of reciprocal basis vector assignments of the CRISP program for the derived unit cell areas of image #8 are shown by the corresponding entries in Tables 5, 6.
Between the two datasets, 13282 non-redundant ortholog pairs could be identified by linkage of reciprocal Ensembl homology assignments (Table 1).
Informed by our previous work with the CRISP program [13], we utilized the manual reciprocal basis vector assignment option whenever the automatically (by default) assigned reciprocal lattice in the dFT amplitude map was obviously incorrect by visual inspection.
The results of the manual (non-default) reciprocal basis vector assignment settings of the CRISP program are marked by ۞ signs in Table 4.
The area of the direct space unit cell that is obtained for this particular reciprocal lattice basis assignment must, for geometric reasons, match that of the rectangular unit cell area that this image features per design.
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