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The author of the report card, Trevor Houser, a former senior State Department adviser on international energy issues, told me he sees reasonable alignment between China's goals for the economy and emissions: Zou Ji mentions the challenges an industrializing economy faces in reducing emissions.
WALL STREET JOURNAL I.S.S. Endorses Pay at JPMorgan and Morgan Stanley | The influential proxy advisory firm Institutional Shareholder Services said the executive compensation plans at JPMorgan Chase and Morgan Stanley showed "reasonable alignment" between shareholder returns and pay, Bloomberg News reports.
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Despite the relatively modest level of sequence identity, a reasonable alignment could be made.
The state " skip" is an extra state for each exon alignment stage for the cases that there is no reasonable alignment available for one certain exon.
Unfinished (incompletely sequenced) clones are noted only where there was no reasonable alignment with a finished clone.
As long as the best template can be identified, we can generate a reasonable alignment as shown in Figure 1.
As the question under consideration concerns the divergence of specific genes and proteins over a (presumably) long time scale, the capacity to generate reasonable alignments diminishes with increasing time of divergence between types, conditional on the rate of substitution.
Reasonable alignments are only achieved from 15% sequence identity upwards, and above 35% alignments differ little between methods.
Many alignment methods often produce reasonable alignments which score worse than alignments with alternative templates.
This implies that starting trees based on reasonable ML analyses of reasonable alignments are likely to have these favorable properties.
Trees were constructed for 1,265 gene families with reasonable alignments for more than 3 members.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com