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GATK realignment was used to realign reads locally in areas surrounding insertions and deletions (indels) [ 22, 23].
Local indel realignment was undertaken by the "Indel Realigner" function from the Genome Analysis Toolkit GATKK – version 2.4-9) to avoid misalignment that might cause mismatches and compromise base quality recalibration.
The realignment was pronounced and profound.
This realignment was rooted in the fact that 1968 had two faces.
With the election of Richard Nixon, in 1968, the realignment was virtually complete.
That political realignment was the most profound and successful of the twentieth century.
Universities switching conferences — so-called conference realignment — was a constant topic of conversation.
The last round of base realignment was carried out in 2005 by the administration of President George W. Bush.
Seattle Coach Mike Holmgren said that realignment was good for the league and that his team would adjust.
Franklin Roosevelt's political vision of party realignment was compelling; and yet the purge was hastily contrived and its execution amateurish.
The essential feature of the New Deal realignment was that it produced not only Democratic victories but also Democratic partisans.
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