Sentence examples for realignment tool from inspiring English sources

The reads were realigned using the local realignment tool in Strand NGS.

Data were temporally realigned to correct for interleaved slice acquisition and spatially realigned to correct for head motion using FSL's MCFLIRT linear realignment tool.

Our modifications included the usage of Muscle [ 43] for protein alignment and subsequent use of the realignment tool of Csurös et al. [ 44] to optimize the recognition of conserved intron positions.

Data interpolation and data realignment tools also provide the possibility to patch the timestamp or shift the data back to its correct position [34].

This problem can be overcome either by applying realignment tools (such as GATK [ 35]) or de novo assembly.

What a difference a generation makes — a generation of determined effort by Republican strategists to use the abortion issue as a tool of party realignment and political self-interest.

We also compared the results after removing small indel-induced artefacts using GATKs local realignment and base quality recalibration tool.

In brief, the RealignerTargetCreator and the IndelRealigner tools were used for local realignment around indels, the BaseRecalibrator and the PrintReads tools were used for quality score recalibration, the UnifiedGenotyper tool was used for variant calling, and the VariantRecalibrator and ApplyRecalibration tools were used for variant quality score recalibration.

Governments themselves might be transformed by new political movements emerging in response to the dissatisfaction generated by technological change: in benign ways, through political reform and realignment, or in uglier fashion.Technologies are tools without an agenda of their own, but their influence on society is never neutral.

In addition, when used with other popular paired-end aligner such as BWA-ALN or NOVOALIGN, which do not identify split-read mappings, SAMBLASTER can extract unmapped and clipped reads for realignment with a sensitive split-read alignment tool such as YAHA (Faust and Hall, 2012) for later use to detect SV.

This tool was used to perform local realignment around indels and then call SNPs and indels for the region of interest.